Linking Disease Associations with Regulatory Information in the Human Genome - Companion website
Marc A. Schaub, Alan P. Boyle, Anshul Kundaje, Serafim Batzoglou, Michael Snyder, Stanford University

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Study: Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02). [PMID:19115949]
First author: Limou S
Journal: J Infect Dis
Date: 01/01/2009
Phenotype: AIDS progression
Study population: 275 HIV positive patients, 1,438 controls
Replication population: 626 patients
Association P-value: 5 x 10-07
Gene: ZNRD1
Risk allele: G

Lead SNP

Position: chr6:30,032,522 (Open in UCSC Genome Browser)
Distance to nearest TSS: 165 bp
GENCODE v7 location: Exon, non-coding
RegulomeDB Score: 6 - Motif (Open in RegulomeDB)

Linkage disequilibrium region

Linkage disequilibrium threshold:
 - In all HapMap 2 populations: r2≥0.8 r2≥0.9 r2=1.0 
 - In the HapMap 2 CEU population r2≥0.8 r2≥0.9 r2=1.0 

No SNPs found for this LD threshold.

This resource uses data from:
 - The NHGRI GWAS catalog (accessed August 10, 2011)
 - The ENCODE project
 - RegulomeDB
 - The HapMap project

Contact: marc.schaub AT
Last modified: 2011-12-15 01:19:16
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