Linking Disease Associations with Regulatory Information in the Human Genome - Companion website
Marc A. Schaub, Alan P. Boyle, Anshul Kundaje, Serafim Batzoglou, Michael Snyder, Stanford University

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Study: Genomewide association for schizophrenia in the CATIE study: results of stage 1. [PMID:18347602]
First author: Sullivan PF
Journal: Mol Psychiatry
Date: 03/18/2008
Phenotype: Schizophrenia
Study population: 738 cases,733 controls
Association P-value: 2 x 10-06
Odds ratio [95% confidence interval]: 6.01 [NR]
Gene: AGBL1
Minor allele frequency (controls): 0.03

Lead SNP

Position: chr15:86,984,240 (Open in UCSC Genome Browser)
Distance to nearest TSS: 547,084 bp
GENCODE v7 location: Intron
RegulomeDB Score: 6 - Motif (Open in RegulomeDB)

Linkage disequilibrium region

Linkage disequilibrium threshold:
 - In all HapMap 2 populations: r2≥0.8 r2≥0.9 r2=1.0 
 - In the HapMap 2 CEU population r2≥0.8 r2≥0.9 r2=1.0 

No SNPs found for this LD threshold.

This resource uses data from:
 - The NHGRI GWAS catalog (accessed August 10, 2011)
 - The ENCODE project
 - RegulomeDB
 - The HapMap project

Contact: marc.schaub AT
Last modified: 2011-12-15 01:19:23
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