Linking Disease Associations with Regulatory Information in the Human Genome - Companion website
Marc A. Schaub, Alan P. Boyle, Anshul Kundaje, Serafim Batzoglou, Michael Snyder, Stanford University

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Study: A genome-wide association study of carotid atherosclerosis in HIV-infected men. [PMID:20009918]
First author: Shrestha S
Journal: AIDS
Date: 01/01/2010
Phenotype: Carotid atherosclerosis in HIV infection
Study population: 177 Caucasian HIV-infected men
Association P-value: 2 x 10-06
Gene: MAST4
Risk allele: C
Minor allele frequency (controls): 0.36

Lead SNP

Position: chr5:66,452,175 (Open in UCSC Genome Browser)
Distance to nearest TSS: 42,098 bp
GENCODE v7 location: Intron
No regulatory annotation found

Linkage disequilibrium region

Linkage disequilibrium threshold:
 - In all HapMap 2 populations: r2≥0.8 r2≥0.9 r2=1.0 
 - In the HapMap 2 CEU population r2≥0.8 r2≥0.9 r2=1.0 

No SNPs found for this LD threshold.

This resource uses data from:
 - The NHGRI GWAS catalog (accessed August 10, 2011)
 - The ENCODE project
 - RegulomeDB
 - The HapMap project

Contact: marc.schaub AT
Last modified: 2011-12-15 01:19:15
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