Linking Disease Associations with Regulatory Information in the Human Genome - Companion website
Marc A. Schaub, Alan P. Boyle, Anshul Kundaje, Serafim Batzoglou, Michael Snyder, Stanford University

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rs1532085

Associations

Study: Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. [PMID:19060911]
First author: Aulchenko YS
Journal: Nat Genet
Date: 12/07/2008
Phenotype: Cholesterol, total
Study population: 22,562 individuals
Association P-value: 4 x 10-07
Odds ratio [95% confidence interval]: .05 [NR] s.d. decrease
Gene: RPL28P4 - LIPC
Risk allele: G
Minor allele frequency (controls): 0.59

Study: Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. [PMID:19060911]
First author: Aulchenko YS
Journal: Nat Genet
Date: 12/07/2008
Phenotype: HDL cholesterol
Study population: 21,412 individuals
Association P-value: 1 x 10-35
Odds ratio [95% confidence interval]: .13 [NR] s.d. decrease
Gene: RPL28P4 - LIPC
Risk allele: G
Minor allele frequency (controls): 0.59

Study: Genome-wide association analysis of metabolic traits in a birth cohort from a founder population. [PMID:19060910]
First author: Sabatti C
Journal: Nat Genet
Date: 12/07/2008
Phenotype: HDL cholesterol
Study population: 4,763 individuals
Association P-value: 2 x 10-10
Odds ratio [95% confidence interval]: .05 [0.03-0.06] mmol/l increase
Gene: RPL28P4 - LIPC
Risk allele: A
Minor allele frequency (controls): 0.44

Lead SNP

rs1532085
Position: chr15:58,683,366 (Open in UCSC Genome Browser)
Distance to nearest TSS: 207,031 bp
GENCODE v7 location: Intergenic region
No regulatory annotation found

Linkage disequilibrium region

Linkage disequilibrium threshold:
 - In all HapMap 2 populations: r2≥0.8 r2≥0.9 r2=1.0 
 - In the HapMap 2 CEU population r2≥0.8 r2≥0.9 r2=1.0 

No SNPs found for this LD threshold.




Credits:
This resource uses data from:
 - The NHGRI GWAS catalog (accessed August 10, 2011)
 - The ENCODE project
 - RegulomeDB
 - The HapMap project

Contact: marc.schaub AT cs.stanford.edu
Last modified: 2011-12-15 01:19:22
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