Linking Disease Associations with Regulatory Information in the Human Genome - Companion website
Marc A. Schaub, Alan P. Boyle, Anshul Kundaje, Serafim Batzoglou, Michael Snyder, Stanford University

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Study: Genome-wide association scan of Dupuytren's disease. [PMID:20971583]
First author: Ojwang JO
Journal: J Hand Surg Am
Date: 10/22/2010
Phenotype: Dupuytren's disease
Study population: 37 European ancestry cases, 34 European ancestry controls
Association P-value: 6 x 10-06
Odds ratio [95% confidence interval]: 6.22 [2.37-16.31]
Gene: HLX - DUSP10
Risk allele: C
Minor allele frequency (controls): 0.083

Lead SNP

Position: chr1:221,617,076 (Open in UCSC Genome Browser)
Distance to nearest TSS: 107,437 bp
GENCODE v7 location: Intergenic region
No regulatory annotation found

Linkage disequilibrium region

Linkage disequilibrium threshold:
 - In all HapMap 2 populations: r2≥0.8 r2≥0.9 r2=1.0 
 - In the HapMap 2 CEU population r2≥0.8 r2≥0.9 r2=1.0 

No SNPs found for this LD threshold.

This resource uses data from:
 - The NHGRI GWAS catalog (accessed August 10, 2011)
 - The ENCODE project
 - RegulomeDB
 - The HapMap project

Contact: marc.schaub AT
Last modified: 2011-12-15 01:19:11
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